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	<title>The Wild Type &#187; usability</title>
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	<description>The Phenotype Of Online Scientific Data</description>
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		<title>Do we need a style guide for biology (or: is it time to stop capitalizing DNA)?</title>
		<link>http://thewildtype.com/2008/08/09/do-we-need-a-style-guide-for-biology-or-is-it-time-to-stop-capitalizing-dna/</link>
		<comments>http://thewildtype.com/2008/08/09/do-we-need-a-style-guide-for-biology-or-is-it-time-to-stop-capitalizing-dna/#comments</comments>
		<pubDate>Sun, 10 Aug 2008 02:50:26 +0000</pubDate>
		<dc:creator>tharris</dc:creator>
				<category><![CDATA[usability]]></category>
		<category><![CDATA[elegans]]></category>
		<category><![CDATA[guidelines]]></category>
		<category><![CDATA[nomenclature]]></category>
		<category><![CDATA[strunk and white]]></category>
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		<description><![CDATA[Last week, Caroline Winter wrote about the peculiarities of capitalizing the personal pronoun in English ["Me, Myself, and I", 5 Aug 2008, NY Times].


Just like the debate over capitalization of internet, perhaps it&#8217;s time to begin referring to DNA in the lowercase.  And the same goes for you too, RNA.  DNA, after all, [...]]]></description>
			<content:encoded><![CDATA[<p></p><p>Last week, Caroline Winter wrote about the peculiarities of capitalizing the personal pronoun in English [<a href="http://www.nytimes.com/2008/08/03/magazine/03wwln-guestsafire-t.html?ex=1375416000&#038;en=25c57b176f14a47b&#038;ei=5124&#038;partner=permalink&#038;exprod=permalink">"Me, Myself, and I"</a>, 5 Aug 2008, <a href="http://www.nytimes.com/">NY Times</a>].
</p>
<p>
Just like the debate over capitalization of <a href="http://en.wikipedia.org/wiki/Internet_capitalization_conventions">internet</a>, perhaps it&#8217;s time to begin referring to DNA in the lowercase.  And the same goes for you too, RNA.  DNA, after all, isn&#8217;t a proper noun.  It&#8217;s not even a very representative acronym.  Once you get the knack of it, muscle memory just melts away and is reformed.  dna dna dna.  Easy.  And perhaps what we <b>really</b> need is a Web 2.0 style name.  How about <i>doxbo</i> or <i>dribo</i> or <i>druleic</i>?  I&#8217;m already all over <a href="http://godaddy.com/">GoDaddy</a>.  Don&#8217;t even think of squatting on my domains!</p>
<p>
I say this half tongue-in-cheek, of course, but adoption of naming and formatting standards has been a huge boon for the biological sciences.  Compare, for example, <i>D. melanogaster</i> and <i>C. elegans</i> genetics.  I admit when I was a graduate student working in a <i>C. elegans</i> lab that I was incredibly jealous over the latitude that my fly counterparts had in choosing such whimsical names for their genes.  But is freeform naming and formatting such a good idea?
</p>
<p>
The very detailed and carefully controlled <a href="http://www.wormbase.org/wiki/index.php/UserGuide:Nomenclature">nomenclature of the C. elegans</a> field makes naming and referencing genes, IMHO, much easier.  But it&#8217;s not just a naming scheme.  It&#8217;s also about formatting and usage.  These guidelines make it instantly apparent in a publication if one is referring to a gene, a locus, a protein product, a mutation, a strain, etc.
</p>
<p>A generic usage guideline &#8212; an <a href="http://www.amazon.com/Elements-Style-Fourth-William-Strunk/dp/020530902X">Elements Of Style</a> for Biology &#8212; would go a long way towards easier sharing of research findings from one experimental niche to another.</p>
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